Introduction | Installation | Processing overview of the scRNA-seq atlas | Atlas data format | Processed data access | Raw data access | Chimera data information | Background | Available datasets | snATAC-seq data information | seqFISH data information | 10X multiome data information | Accessory data information | Working with the data outside of Bioconductor and R | Session Information | References

Introduction | Reading in 10X Genomics data | From the UMI count matrix | From the molecule information file | Downsampling on the reads | Computing barcode ranks | Detecting empty droplets | Demultiplexing hashed libraries | Removing swapping effects | Barcode swapping between samples | Chimeric reads within cells | Session information