DropletUtils - Utilities for Handling Single-Cell Droplet Data
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.
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immunooncologysinglecellsequencingrnaseqgeneexpressiontranscriptomicsdataimportcoveragecurlopensslcpp
10.23 score 14 dependents 3.3k scripts 6.1k downloadsMouseGastrulationData - Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis
Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.
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experimentdataexpressiondatasequencingdatarnaseqdatasinglecelldataexperimenthubmus_musculus_datadatapkg
7.71 score 13 stars 3 dependents 145 scripts